BioInfoRx to Attend LAMA-ATA Meeting April 15-18
BioInfoRx is an Allied Trade Association member, and will participate and present at the 40th Annual Laboratory Animal Management Association conference in Fort Walton Beach, Florida.
5 Tips for Robust and Reproducible scRNA-Seq Data Analysis
BioInfoRx and Biogen have developed scRNASequest, an open-source ecosystem for scRNA-seq analysis, visualization, and publishing. To make this powerful pipeline more accessible, our team has introduced a fully supported and user-friendly version in BxGenomics, enabling academic and small biotech researchers to leverage its capabilities without the need for extensive IT and bioinformatics expertise. Here we shared some tips we learned from developing and running the pipeline on hundreds of scRNA-Seq experiments.
RNA-Seq Case Study: Genes Regulated by p53-SET Interplay
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The oncoprotein SET can bind to p53 and inhibits p53 transcriptional activity in unstressed cells. To identify the genes regulated by SET in a p53-dependent manner, the endogenous SET was depleted by siRNA in control or p53 knockout U2OS cells. We use BxGenomics DEG and Venn Diagram tools to find genes regulated by p53-SET. Reference: Nature. 2016 Oct 6;538(7623):118-122. doi: 10.1038/nature19759. |
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RNA-Seq Case Study: iPSC Differentiation into Muscle and Neuron
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We use BxGenomics to examine RNA-Seq data from three key time points during human iPSC differentiation into mature muscle fibers with motor neurons. We can detect consistent genes changes as the cells differentiate, and myogenesis and nurogenesis genes are highly enriched in later time points. Reference: Cells. 2020 Jun 23;9(6):1531. doi: 10.3390/cells9061531. |
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Ultimate Molecular Cloning Guides
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BxSeqTools Enables Gene Sequence Anaysis and Molecular Cloning in The Cloud BxSeqTools is an integrated system allowing users to perform sequence analysis online, use your own data and resources, use public databases like GenBank, organize the results, and perform further molecular cloning work using built in bioinformatics tools. Everything is seamlessly integrated and readily available online. |
mLIMS Release Notes in December, 2021
- Improved Litter Survival and Breeding Performance Reports
- Improved Cage Usage Reports
- Create Animal Tags
- Customize the Strain Dropdown List
- Create Forms (Premium Feature)
Learn more at https://mlims.com/help/what_s_new_in_mlims_2021.htm